PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g10050.6
Common NameLR48_Vigan07g151400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 184aa    MW: 20508 Da    PI: 5.1276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g10050.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.8e-21250355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Vang01g10050.6  2 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 50
                    9******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-37164IPR001471AP2/ERF domain
PROSITE profilePS5103223.103158IPR001471AP2/ERF domain
CDDcd000188.75E-33260No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32259IPR001471AP2/ERF domain
PfamPF008471.6E-14250IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-23259IPR016177DNA-binding domain
PRINTSPR003671.2E-11213IPR001471AP2/ERF domain
PRINTSPR003671.2E-112440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYRLRG DFARLNFPNL  60
KGSCLGEYKP LQSAVDAKLD AICQSLAEMP KQGKTEKGAR ASSKKSKAAR NPTQDPNPNL  120
VCKAEPELEP EAEPVLSPES DGSVDSSPLS DLTFDVSEPQ WEDASAYFNL QKFPSYEIDW  180
DSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21258663ATERF1
3gcc_A2e-21258663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505329.11e-119PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E42e-67RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0S3RMJ81e-133A0A0S3RMJ8_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UY651e-133A0A0L9UY65_PHAAN; Uncharacterized protein
STRINGGLYMA13G01930.15e-96(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-51related to AP2 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]